species:   Bodot
pid:       PID1125
parent:    Bd-milR8
paralog:   
locus:     MU009149.1:1804218-1804360
matures:   ['UUUCUCGGCUGCUUUGCUUACUG', 'GAAGGCAAAGCACCUGAUGAAGCU']
srr:       SRR8374847
genome:    /Users/jax/+Genomes/Fungal_genomes/Bodot.GCA_011064635.1_ASM1106463v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374847.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374847.cram MU009149.1:1804218-1804360

0 out of bounds
9 alignments
9 proper strand
4 stranded perfect matches

        *************************                                                                            **************************        
UGUAAUUUUGUUUCUCGGCUGCUUUGCUUACUGGAGGGUGAAGGGGUUCCGGAGUCUGGUGCCAGCGGAGUUCUGGAUGACUCUAUACUACUUAUUCCCCUCCACUGGCGGGAAGGCAAAGCACCUGAUGAAGCUGGCUCCCU
.........(((((((((.((((((((((.((.(..((((.(((((.(((((((((((.......)))).)))))))...................))))).))))..).)).)))))))))).)))).))))).........
----------UUUCUCGGCUGCUUUGCUUACUG-------------------------------------------------------------------------------------------------------------- l=23 a=4 c
---------------------------------------------------------------------------------------------------------------GAAGGCAAAGCACCUGAUGAAGCU-------- l=24 a=0 c*
----------UUUCUCGGCUGCUUUGCUUACUG-------------------------------------------------------------------------------------------------------------- l=23 a=4 ma
---------------------------------------------------------------------------------------------------------------GAAGGCAAAGCACCUGAUGAAGCU-------- l=24 a=0 ma*

-----------UUCUCGGCUGCUUUGCUUACUu-------------------------------------------------------------------------------------------------------------- l=22 a=2 
----------UUUCUCGGCUGCUUUGCUUACc--------------------------------------------------------------------------------------------------------------- l=22 a=1 
----------UUUCUCGGCUGCUUUGCUUACUG-------------------------------------------------------------------------------------------------------------- l=23 a=4 (c,ma)
----------UUUCUCGGCUGCUUUGCUUACUa-------------------------------------------------------------------------------------------------------------- l=23 a=2 

mb-01011
ax-1011011
ku-01
ss-111111111100
fn-111
